Research workbench
Structures of the substrate-binding protein provide insights into the multiple compatible solutes binding specificities of bacillus subtilis ABC transporter opuc
Analyse Structures of the substrate-binding protein provide insights into the multiple… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PPN
- Type
- protein
- Length
- 540 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycine BETAINE/CARNITINE/CHOLINE-binding protein
- UniProt
- O32243
- Pockets
- 5 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glycine BETAINE/CARNITINE/CHOLINE-binding protein | protein | 270 | 45% helix, 18% strand | O32243 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1153 | 0.84 | 0.85 | 116 | empty |
| 2 | 213 | 0.55 | 0.78 | 23 | empty |
| 3 | 210 | 0.52 | 0.77 | 27 | empty |
| 4 | 64 | 0.39 | 0.80 | 15 | empty |
| 5 | 71 | 0.30 | 0.74 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 965 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 3PPN · Structures of the substrate-binding protein provide insights into the multiple compatible… · the same entry in another collection · chain A against A, TM-score 1.00
- O32243 · AlphaFold monomer V2.0 prediction for glycine BETAINE/CARNITINE/CHOLINE-binding protein… · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O32243
- Elsewhere: RCSB PDB 3PPN · PDBe 3PPN · UniProt O32243
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