Research workbench

The crystal structure of a possible member of GH105 family from klebsiella pneumoniae subsp. pneumoniae mgh 78578

Analyse The crystal structure of a possible member of GH105 family from klebsiella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3PMM
Type: protein
Length: 381 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative cytoplasmic protein
UniProt: A6TB44
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative cytoplasmic protein	protein	381	54% helix, 7% strand	A6TB44

Ligands and binding sites

FMT · Formic acid · additive · 8 copies · chains A
IMD · Imidazole · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	434	0.68	0.80	46	FMT

Modifications

Observed in the structure: 16 modified (engineered).

Compared structures

3PMM · The crystal structure of a possible member of GH105 family from Klebsiella pneumoniae… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6TB44
Elsewhere: RCSB PDB 3PMM · PDBe 3PMM · UniProt A6TB44

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.