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Crystal structure of the human anterior gradient protein 3

Analyse Crystal structure of the human anterior gradient protein 3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3PH9
Type: protein
Length: 268 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Anterior gradient protein 3 homolog
EC: 5.3.4.1
UniProt: Q8TD06
Pockets: 2 · best druggability 0.33

Structure

x-ray diffraction · 2 distinct chains · 38% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Anterior gradient protein 3 homolog (EC 5.3.4.1)	protein	133	38% helix, 13% strand	Q8TD06
B	Anterior gradient protein 3 homolog (EC 5.3.4.1)	protein	135	39% helix, 13% strand	Q8TD06

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.33	0.74	21	empty
2	59	0.32	0.76	19	empty

Interfaces

1 interface between chains.

A–B · 918 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

3PH9 · Crystal structure of the human anterior gradient protein 3 · the same entry in another collection · chain A against A, TM-score 1.00
Q8TD06 · AlphaFold monomer V2.0 prediction for anterior gradient protein 3 (Q8TD06) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8TD06
Elsewhere: RCSB PDB 3PH9 · PDBe 3PH9 · UniProt Q8TD06

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