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Structure of the imidazole-adduct of the phormidium laminosum cytochrome C6 Q51V variant

Analyse Structure of the imidazole-adduct of the phormidium laminosum cytochrome C6… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3PH2
Type: protein
Length: 85 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C6
Ligands: HEC
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 56% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Cytochrome C6	protein	85	56% helix, 2% strand	—

Ligands and binding sites

HEC · Heme C · ligand · chains B
IMD · Imidazole · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	226	0.63	0.82	28	HEC, IMD

Modifications

Observed in the structure: 2 cofactor (heme c attachment).

Compared structures

3PH2 · Structure of the imidazole-adduct of the Phormidium laminosum cytochrome c6 Q51V variant · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3PH2 · PDBe 3PH2

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