Research workbench

Methanococcus jannaschii fibrillarin pre-rRNA processing protein

Analyse Methanococcus jannaschii fibrillarin pre-rRNA processing protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1G8S
Type: protein
Length: 230 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fibrillarin-like pre-rRNA processing protein
UniProt: Q58108
Ligands: MET
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fibrillarin-like pre-rRNA processing protein	protein	230	26% helix, 32% strand	Q58108

Ligands and binding sites

MET · Methionine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	84	0.38	0.77	19	empty

Compared structures

1G8S · Methanococcus jannaschii fibrillarin pre-rRNA processing protein · the same entry in another collection · chain A against A, TM-score 1.00
Q58108 · AlphaFold monomer V2.0 prediction for fibrillarin-like RRNA/TRNA 2'-O-methyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58108
Elsewhere: RCSB PDB 1G8S · PDBe 1G8S · UniProt Q58108

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