Research workbench
Crystal structure of a eal domain of ggdef domain protein from pseudomonas fluorescens pf
Analyse Crystal structure of a eal domain of ggdef domain protein from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PFM
- Type
- protein
- Length
- 243 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ggdef domain protein
- UniProt
- Q4KKF5
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ggdef domain protein | protein | 243 | 51% helix, 21% strand | Q4KKF5 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 278 | 0.57 | 0.78 | 29 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3PFM · Crystal structure of a EAL domain of GGDEF domain protein from Pseudomonas fluorescens Pf · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4KKF5
- Elsewhere: RCSB PDB 3PFM · PDBe 3PFM · UniProt Q4KKF5
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