Research workbench
Structure of the PDLIM2 PDZ domain in complex with the C-terminal 6- peptide extension of NS1
Analyse Structure of the PDLIM2 PDZ domain in complex with the C-terminal 6- peptide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PDV
- Type
- protein
- Length
- 89 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PDZ and lim domain protein 2, C-teminal peptide from nonstructural protein 1
- UniProt
- Q96JY6, Q29SJ1
- Ligands
- NA
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PDZ and lim domain protein 2, C-teminal peptide from nonstructural protein 1 | protein | 89 | 18% helix, 37% strand | Q96JY6, Q29SJ1 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 3PDV · Structure of the PDlim2 PDZ domain in complex with the C-terminal 6-peptide extension of… · the same entry in another collection · chain A against A, TM-score 1.00
- Q96JY6 · AlphaFold monomer V2.0 prediction for PDZ and lim domain protein 2 (Q96JY6) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96JY6
- Every structure of UniProt Q29SJ1
- Elsewhere: RCSB PDB 3PDV · PDBe 3PDV · UniProt Q96JY6 · UniProt Q29SJ1
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