Research workbench
Hibiscus latent singapore virus
Analyse Hibiscus latent singapore virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PDM
- Type
- protein + RNA
- Length
- 165 residues
- Chains
- 2
- Method
- fiber diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(P*GP*AP*A)-3'); Coat protein
- UniProt
- Q8BE68
- Pockets
- 1 · best druggability 0.63
Structure
fiber diffraction · 2 distinct chains · 36% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| R | RNA (5'-R(P*GP*AP*A)-3') | rna | 3 | — | — |
| P | Coat protein | protein | 162 | 36% helix, 5% strand | Q8BE68 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.63 | 0.88 | 20 | empty |
Interfaces
1 interface between chains.
- R–P · 415 Ų buried · 19 hydrogen bonds · protein-nucleic
Compared structures
- 3PDM · Hibiscus Latent Singapore virus · the same entry in another collection · chain R against R, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8BE68
- Elsewhere: RCSB PDB 3PDM · PDBe 3PDM · UniProt Q8BE68
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