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Peptidase module of the peptidoglycan hydrolase ripa (RV1477) from mycobacterium tuberculosis at 1.38 resolution

Analyse Peptidase module of the peptidoglycan hydrolase ripa (RV1477) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3PBC
Type: protein
Length: 208 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Invasion protein
UniProt: O53168
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Invasion protein	protein	208	26% helix, 24% strand	O53168

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.64	0.92	24	empty

Compared structures

3PBC · Peptidase module of the peptidoglycan hydrolase RipA (Rv1477) from Mycobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
O53168 · AlphaFold monomer V2.0 prediction for peptidoglycan endopeptidase ripa (O53168) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O53168
Elsewhere: RCSB PDB 3PBC · PDBe 3PBC · UniProt O53168

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