Research workbench

RV2966C of M. tuberculosis is a rsmd-like methyltransferase

Analyse RV2966C of M. tuberculosis is a rsmd-like methyltransferase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3P9N
Type: protein
Length: 182 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Possible methyltransferase (methylase)
EC: 2.1.1.-
UniProt: P95128
Pockets: 1 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Possible methyltransferase (methylase) (EC 2.1.1.-)	protein	182	31% helix, 26% strand	P95128

Ligands and binding sites

ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	330	0.62	0.79	38	empty

Compared structures

3P9N · Rv2966c of M. tuberculosis is a RsmD-like methyltransferase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P95128
Elsewhere: RCSB PDB 3P9N · PDBe 3P9N · UniProt P95128

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