Research workbench
Crystal structure of the archaeal asparagine synthetase a
Analyse Crystal structure of the archaeal asparagine synthetase a in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3P8T
- Type
- protein
- Length
- 588 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Asns-like asparaginyl-tRNA synthetase related protein
- UniProt
- Q9V228
- Pockets
- 6 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Asns-like asparaginyl-tRNA synthetase related protein | protein | 294 | 37% helix, 23% strand | Q9V228 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 273 | 0.80 | 0.92 | 53 | empty |
| 2 | 285 | 0.79 | 0.91 | 53 | empty |
| 3 | 84 | 0.39 | 0.78 | 17 | empty |
| 4 | 68 | 0.34 | 0.76 | 15 | empty |
| 5 | 77 | 0.34 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 2955 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
- 3P8T · Crystal structure of the archaeal asparagine synthetase A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V228
- Elsewhere: RCSB PDB 3P8T · PDBe 3P8T · UniProt Q9V228
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