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Crystal structure of single chain recombinant jacalin showing highly dynamic posttranslational excission loop that reduces binding affinity
Analyse Crystal structure of single chain recombinant jacalin showing highly dynamic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3P8S
- Type
- protein
- Length
- 302 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Jacalin
- UniProt
- Q38723
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 64% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Jacalin | protein | 150 | 0% helix, 64% strand | Q38723 |
| B | Jacalin | protein | 152 | 0% helix, 64% strand | Q38723 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.39 | 0.74 | 25 | empty |
| 2 | 90 | 0.33 | 0.74 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 974 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 3P8S · Crystal structure of single chain recombinant jacalin showing highly dynamic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q38723
- Elsewhere: RCSB PDB 3P8S · PDBe 3P8S · UniProt Q38723
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