Research workbench
Y351F mutant of pentaerythritol tetranitrate reductase containing a bound acetate molecule
Analyse Y351F mutant of pentaerythritol tetranitrate reductase containing a bound… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3P8I
- Type
- protein
- Length
- 362 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pentaerythritol tetranitrate reductase
- EC
- 1.6.99.1
- UniProt
- P71278
- Ligands
- FMN
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentaerythritol tetranitrate reductase (EC 1.6.99.1) | protein | 362 | 35% helix, 19% strand | P71278 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 423 | 0.74 | 0.84 | 39 | FMN, ACT |
Compared structures
- 3P8I · Y351F mutant of pentaerythritol tetranitrate reductase containing a bound acetate molecule · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71278
- Elsewhere: RCSB PDB 3P8I · PDBe 3P8I · UniProt P71278
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