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Crystal structure of cytochrome P450CAM crystallized in the presence of a tethered substrate analog ADAC1-C6-bio

Analyse Crystal structure of cytochrome P450CAM crystallized in the presence of a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3P6P
Type
protein
Length
407 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Camphor 5-monooxygenase
EC
1.14.15.1
UniProt
P00183
Ligands
HEM, A6B, K
Pockets
2 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 10% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACamphor 5-monooxygenase (EC 1.14.15.1)protein40752% helix, 10% strandP00183

Ligands and binding sites

  • HEM · Protoporphyrin IX containing Fe · ligand · chains A
  • A6B · (3S,5S,7S)-N-[6-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexyl]tricyclo[3.3.1.1~3,7~]decane-1-carboxamide · ligand · chains A
  • K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
16870.860.8976HEM, A6B
2630.530.8721empty

Compared structures

  • 3P6P · Crystal Structure of Cytochrome P450cam crystallized in the presence of a tethered… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00183 · AlphaFold monomer V2.0 prediction for camphor 5-monooxygenase (P00183) · a predicted model of the same protein · chain A against A, TM-score 0.98

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