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Structure and mechanism of the S component of a bacterial ecf transporter

Analyse Structure and mechanism of the S component of a bacterial ecf transporter in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3P5N
Type: protein
Length: 336 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Riboflavin uptake protein
UniProt: C2GB05
Ligands: RBF
Pockets: 3 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Riboflavin uptake protein	protein	168	73% helix, 0% strand	C2GB05

Ligands and binding sites

RBF · Riboflavin · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	156	0.74	0.92	29	RBF
2	150	0.73	0.92	29	RBF
3	76	0.30	0.72	16	empty

Interfaces

1 interface between chains.

A–B · 799 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

3P5N · Structure and mechanism of the S component of a bacterial ECF transporter · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C2GB05
Elsewhere: RCSB PDB 3P5N · PDBe 3P5N · UniProt C2GB05

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