Research workbench
X-ray structure of pentameric HIV-1 ca
Analyse X-ray structure of pentameric HIV-1 ca in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3P0A
- Type
- protein
- Length
- 3,952 residues
- Chains
- 20
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 ca
- UniProt
- Q72497
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, F, J, K, O, P, T | HIV-1 ca | protein | 197 | 0% helix, 0% strand | Q72497 |
| B, C, D, G, H, I, L, M, N, Q, R, S | HIV-1 ca | protein | 198 | 0% helix, 0% strand | Q72497 |
Interfaces
24 interfaces between chains.
- C–R · 155 Ų buried · 0 hydrogen bonds · protein-protein
- I–J · 143 Ų buried · 0 hydrogen bonds · protein-protein
- F–J · 130 Ų buried · 0 hydrogen bonds · protein-protein
- N–O · 119 Ų buried · 0 hydrogen bonds · protein-protein
- D–E · 114 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3P0A · X-ray structure of pentameric HIV-1 CA · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72497
- Elsewhere: RCSB PDB 3P0A · PDBe 3P0A · UniProt Q72497
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