Research workbench
Structure of pseudomonas aeruginosa elongation factor P
Analyse Structure of pseudomonas aeruginosa elongation factor P in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OYY
- Type
- protein
- Length
- 373 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elongation factor P
- UniProt
- Q9HZZ2
- Ligands
- PO4
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Elongation factor P | protein | 187 | 5% helix, 52% strand | Q9HZZ2 |
| B | Elongation factor P | protein | 186 | 3% helix, 51% strand | Q9HZZ2 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 267 | 0.50 | 0.74 | 40 | PO4 |
| 2 | 99 | 0.36 | 0.74 | 23 | empty |
| 3 | 71 | 0.29 | 0.73 | 18 | empty |
| 4 | 58 | 0.27 | 0.73 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 630 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HZZ2
- Elsewhere: RCSB PDB 3OYY · PDBe 3OYY · UniProt Q9HZZ2
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