Research workbench
Complex of HIV-1 rre-iib RNA with rsg-1.2 peptide
Analyse Complex of HIV-1 rre-iib RNA with rsg-1.2 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1G70
- Type
- protein + RNA
- Length
- 48 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 rre-iib 32 nucleotide RNA; Rsg-1.2 peptide
- UniProt
- Q7SIF5
- Pockets
- 1 · best druggability 0.43
Structure
solution nmr · 2 distinct chains · 63% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIV-1 rre-iib 32 nucleotide RNA | rna | 32 | — | — |
| B | Rsg-1.2 peptide | protein | 16 | 63% helix, 0% strand | Q7SIF5 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.43 | 0.84 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 933 Ų buried · 25 hydrogen bonds · protein-nucleic
Compared structures
- 1G70 · Complex of HIV-1 rre-iib RNA with rsg-1.2 peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7SIF5
- Elsewhere: RCSB PDB 1G70 · PDBe 1G70 · UniProt Q7SIF5
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