Research workbench
Crystal structure of a putative glycosyltransferase from paramecium bursaria chlorella virus NY2A
Analyse Crystal structure of a putative glycosyltransferase from paramecium bursaria… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OY2
- Type
- protein
- Length
- 784 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyltransferase B736L
- UniProt
- A7IXR1
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glycosyltransferase B736L | protein | 392 | 42% helix, 19% strand | A7IXR1 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 840 | 0.75 | 0.79 | 87 | empty |
| 2 | 704 | 0.72 | 0.79 | 69 | empty |
| 3 | 60 | 0.42 | 0.82 | 18 | empty |
| 4 | 52 | 0.42 | 0.82 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1472 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 3OY2 · Crystal structure of a putative glycosyltransferase from Paramecium bursaria Chlorella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7IXR1
- Elsewhere: RCSB PDB 3OY2 · PDBe 3OY2 · UniProt A7IXR1
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