Research workbench
Structure of phosphotransferase enzyme II, a component from yersinia pestis CO92 at 1.2 a resolution
Analyse Structure of phosphotransferase enzyme II, a component from yersinia pestis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OXP
- Type
- protein
- Length
- 296 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphotransferase enzyme II, a component
- UniProt
- Q7CJ97
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Phosphotransferase enzyme II, a component | protein | 148 | 49% helix, 20% strand | Q7CJ97 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 162 | 0.76 | 0.93 | 38 | empty |
| 2 | 51 | 0.28 | 0.75 | 13 | empty |
| 3 | 57 | 0.27 | 0.74 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 921 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3OXP · Structure of phosphotransferase enzyme II, A component from Yersinia pestis CO92 at 1.2 A… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7CJ97
- Elsewhere: RCSB PDB 3OXP · PDBe 3OXP · UniProt Q7CJ97
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