Research workbench
Crystal structure of CALG1, calicheamicin glycostyltransferase, tdp bound form
Analyse Crystal structure of CALG1, calicheamicin glycostyltransferase, tdp bound form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OTG
- Type
- protein
- Length
- 391 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CALG1
- UniProt
- Q8KNF2
- Ligands
- TYD, CL
- Pockets
- 1 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CALG1 | protein | 391 | 49% helix, 14% strand | Q8KNF2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 867 | 0.82 | 0.84 | 96 | TYD, CL |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3OTG · Crystal Structure of CalG1, Calicheamicin Glycostyltransferase, TDP bound form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KNF2
- Elsewhere: RCSB PDB 3OTG · PDBe 3OTG · UniProt Q8KNF2
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