Research workbench
Human enterovirus 71 3C protease
Analyse Human enterovirus 71 3C protease in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OSY
- Type
- protein
- Length
- 935 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3C protease
- UniProt
- B8YLV9
- Pockets
- 14 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | 3C protease | protein | 187 | 14% helix, 53% strand | B8YLV9 |
Pockets
14 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.41 | 0.81 | 13 | empty |
| 2 | 52 | 0.40 | 0.81 | 13 | empty |
| 3 | 53 | 0.38 | 0.80 | 13 | empty |
| 4 | 54 | 0.38 | 0.80 | 13 | empty |
| 5 | 60 | 0.37 | 0.79 | 19 | empty |
Interfaces
4 interfaces between chains.
- A–B · 1085 Ų buried · 15 hydrogen bonds · protein-protein
- D–E · 1083 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 1073 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 1072 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3OSY · Human enterovirus 71 3C protease · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8YLV9
- Elsewhere: RCSB PDB 3OSY · PDBe 3OSY · UniProt B8YLV9
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