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Crystal structure of a DUF1989 family protein (TM1040_0329) from silicibacter sp. TM1040 at 1.11 a resolution

Analyse Crystal structure of a DUF1989 family protein (TM1040_0329) from silicibacter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3ORU
Type: protein
Length: 231 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DUF1989 family protein
UniProt: Q1GJV4
Ligands: ZN, MG, CL
Pockets: 2 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DUF1989 family protein	protein	231	13% helix, 29% strand	Q1GJV4

Ligands and binding sites

ZN · Zinc ion · metal · chains A
MG · Magnesium ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	247	0.66	0.83	31	empty
2	59	0.33	0.77	20	CL

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

3ORU · Crystal structure of a DUF1989 family protein (TM1040_0329) from SILICIBACTER SP. TM1040… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1GJV4
Elsewhere: RCSB PDB 3ORU · PDBe 3ORU · UniProt Q1GJV4

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