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Crystal structure of RV1498A protein from mycobacterium tuberculosis

Analyse Crystal structure of RV1498A protein from mycobacterium tuberculosis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3OQT
Type: protein
Length: 1,120 residues
Chains: 16
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RV1498A protein
UniProt: Q8VK10
Ligands: NA, CL

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	RV1498A protein	protein	70	23% helix, 44% strand	Q8VK10

Ligands and binding sites

NA · Sodium ion · metal · 5 copies · chains C, H, I, L, P
CL · Chloride ion · ion · 8 copies · chains A, C, E, H, K, L, O, P

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

9 interfaces between chains.

D–E · 186 Å² buried · 4 hydrogen bonds · protein-protein
J–O · 76 Å² buried · 0 hydrogen bonds · protein-protein
A–C · 51 Å² buried · 3 hydrogen bonds · protein-protein
B–D · 47 Å² buried · 2 hydrogen bonds · protein-protein
I–L · 47 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

3OQT · Crystal structure of Rv1498A protein from mycobacterium tuberculosis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8VK10
Elsewhere: RCSB PDB 3OQT · PDBe 3OQT · UniProt Q8VK10

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