Research workbench
Crystal structure of a plp-dependent aminotransferase (ZP_03625122.1) from streptococcus suis 89-1591 at 1.70 a resolution
Analyse Crystal structure of a plp-dependent aminotransferase (ZP_03625122.1) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OP7
- Type
- protein
- Length
- 372 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aminotransferase class I and II
- UniProt
- B9WVA1
- Ligands
- UNL, SO4
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aminotransferase class I and II | protein | 372 | 46% helix, 16% strand | B9WVA1 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- EDO · 1,2-ethanediol · additive · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 169 | 0.58 | 0.82 | 24 | EDO |
| 2 | 192 | 0.48 | 0.75 | 32 | UNL |
| 3 | 79 | 0.30 | 0.73 | 16 | empty |
Modifications
Observed in the structure: 7 modified (engineered, cofactor).
Compared structures
- 3OP7 · Crystal structure of a PLP-dependent aminotransferase (ZP_03625122.1) from Streptococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9WVA1
- Elsewhere: RCSB PDB 3OP7 · PDBe 3OP7 · UniProt B9WVA1
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