Research workbench

Latex profilin HEVB8

Analyse Latex profilin HEVB8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1G5U
Type: protein
Length: 260 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Profilin
UniProt: Q9LEI8
Ligands: NA
Pockets: 1 · best druggability 0.29

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Profilin	protein	130	25% helix, 22% strand	Q9LEI8

Ligands and binding sites

NA · Sodium ion · metal · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	70	0.29	0.73	20	NA

Interfaces

1 interface between chains.

A–B · 642 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

1G5U · Latex profilin HEVB8 · the same entry in another collection · chain A against A, TM-score 1.00
Q9LEI8 · AlphaFold monomer V2.0 prediction for profilin-6 (Q9LEI8) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LEI8
Elsewhere: RCSB PDB 1G5U · PDBe 1G5U · UniProt Q9LEI8

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