Research workbench
The three-dimensional structure of ATP:CORRINOID adenosyltransferase from salmonella typhimurium. apo-ATP form
Analyse The three-dimensional structure of ATP:CORRINOID adenosyltransferase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1G5T
- Type
- protein
- Length
- 157 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- COB(I)ALAMIN adenosyltransferase
- EC
- 2.5.1.17
- UniProt
- P31570
- Ligands
- ATP, MG
- Pockets
- 2 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | COB(I)ALAMIN adenosyltransferase (EC 2.5.1.17) | protein | 157 | 41% helix, 18% strand | P31570 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.30 | 0.75 | 15 | empty |
| 2 | 52 | 0.28 | 0.75 | 12 | empty |
Compared structures
- 1G5T · The three-dimensional structure of ATP:CORRINOID adenosyltransferase from salmonella… · the same entry in another collection · chain A against A, TM-score 1.00
- P31570 · AlphaFold monomer V2.0 prediction for corrinoid adenosyltransferase (P31570) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31570
- Elsewhere: RCSB PDB 1G5T · PDBe 1G5T · UniProt P31570
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.