Research workbench
The crystal structure of a universal stress protein E from proteus mirabilis HI4320
Analyse The crystal structure of a universal stress protein E from proteus mirabilis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OLQ
- Type
- protein
- Length
- 306 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Universal stress protein E
- UniProt
- B4ETT2
- Ligands
- UNL
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Universal stress protein E | protein | 306 | 44% helix, 20% strand | B4ETT2 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.70 | 0.88 | 33 | GOL |
| 2 | 138 | 0.63 | 0.86 | 23 | empty |
| 3 | 90 | 0.46 | 0.80 | 22 | empty |
| 4 | 50 | 0.30 | 0.76 | 17 | empty |
| 5 | 79 | 0.29 | 0.72 | 19 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3OLQ · The crystal structure of a universal stress protein E from Proteus mirabilis HI4320 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4ETT2
- Elsewhere: RCSB PDB 3OLQ · PDBe 3OLQ · UniProt B4ETT2
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