Research workbench
Crystal structure of a protein with unknown function from DUF2233 family (BACOVA_00430) from bacteroides ovatus at 1.80 a resolution
Analyse Crystal structure of a protein with unknown function from DUF2233 family… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OHG
- Type
- protein
- Length
- 285 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein from DUF2233 family
- UniProt
- A7LRK2
- Ligands
- SO4, CL
- Pockets
- 2 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein from DUF2233 family | protein | 285 | 16% helix, 41% strand | A7LRK2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 17 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.32 | 0.77 | 23 | SO4, EDO |
| 2 | 62 | 0.29 | 0.74 | 13 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3OHG · Crystal structure of a protein with unknown function from DUF2233 family (BACOVA_00430)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7LRK2
- Elsewhere: RCSB PDB 3OHG · PDBe 3OHG · UniProt A7LRK2
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