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Crystal structure of the nucleoside-diphosphate sugar epimerase from corynebacterium glutamicum. northeast structural genomics consortium target CGR91

Analyse Crystal structure of the nucleoside-diphosphate sugar epimerase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3OH8
Type: protein
Length: 456 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleoside-diphosphate sugar epimerase (sula family)
UniProt: Q6M4Z6
Pockets: 6 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoside-diphosphate sugar epimerase (sula family)	protein	456	39% helix, 23% strand	Q6M4Z6

Pockets

6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	229	0.74	0.88	41	empty
2	603	0.68	0.77	52	empty
3	288	0.65	0.81	40	empty
4	53	0.51	0.87	18	empty
5	94	0.42	0.78	18	empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

3OH8 · Crystal structure of the nucleoside-diphosphate sugar epimerase from Corynebacterium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6M4Z6
Elsewhere: RCSB PDB 3OH8 · PDBe 3OH8 · UniProt Q6M4Z6

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