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Structured domain of drosophila melanogaster boca P41 2 2 crystal form

Analyse Structured domain of drosophila melanogaster boca P41 2 2 crystal form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3OFE
Type: protein
Length: 159 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ldlr chaperone boca
UniProt: Q8T9B6
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 2 distinct chains · 35% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ldlr chaperone boca	protein	81	33% helix, 37% strand	Q8T9B6
B	Ldlr chaperone boca	protein	78	36% helix, 38% strand	Q8T9B6

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.31	0.73	14	empty

Interfaces

1 interface between chains.

A–B · 501 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3OFE · Structured Domain of Drosophila melanogaster Boca p41 2 2 Crystal form · the same entry in another collection · chain A against A, TM-score 1.00
Q8T9B6 · AlphaFold monomer V2.0 prediction for ldlr chaperone boca (Q8T9B6) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8T9B6
Elsewhere: RCSB PDB 3OFE · PDBe 3OFE · UniProt Q8T9B6

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