Research workbench
Crystal structure of xanthosine phosphorylase bound with xanthine from yersinia pseudotuberculosis
Analyse Crystal structure of xanthosine phosphorylase bound with xanthine from yersinia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ODG
- Type
- protein
- Length
- 273 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xanthosine phosphorylase
- EC
- 2.4.2.-
- UniProt
- Q66D48
- Ligands
- XAN, CL
- Pockets
- 1 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xanthosine phosphorylase (EC 2.4.2.-) | protein | 273 | 36% helix, 24% strand | Q66D48 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 323 | 0.64 | 0.80 | 38 | XAN, CL |
Compared structures
- 3ODG · crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q66D48
- Elsewhere: RCSB PDB 3ODG · PDBe 3ODG · UniProt Q66D48
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