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The crystal structure of a hemolysin-like protein containing cbs domain of oenococcus oeni psu
Analyse The crystal structure of a hemolysin-like protein containing cbs domain of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OCO
- Type
- protein
- Length
- 272 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemolysin-like protein containing cbs domains
- UniProt
- Q04HE1
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hemolysin-like protein containing cbs domains | protein | 136 | 45% helix, 28% strand | Q04HE1 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 554 | 0.66 | 0.77 | 55 | empty |
| 2 | 68 | 0.50 | 0.84 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1332 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
- 3OCO · The crystal structure of a Hemolysin-like protein containing CBS domain of Oenococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04HE1
- Elsewhere: RCSB PDB 3OCO · PDBe 3OCO · UniProt Q04HE1
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