Research workbench
Crystal structure of archaeoglobus fulgidus pelota reveals inter- domain structural plasticity
Analyse Crystal structure of archaeoglobus fulgidus pelota reveals inter- domain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OBY
- Type
- protein
- Length
- 633 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein pelota homolog
- EC
- 3.1.-.-
- UniProt
- O29421
- Pockets
- 6 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein pelota homolog (EC 3.1.-.-) | protein | 317 | 38% helix, 32% strand | O29421 |
| B | Protein pelota homolog (EC 3.1.-.-) | protein | 316 | 37% helix, 29% strand | O29421 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 351 | 0.60 | 0.77 | 56 | empty |
| 2 | 266 | 0.59 | 0.79 | 44 | empty |
| 3 | 126 | 0.42 | 0.75 | 13 | empty |
| 4 | 133 | 0.39 | 0.74 | 21 | empty |
| 5 | 52 | 0.30 | 0.76 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 587 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 3OBY · Crystal structure of Archaeoglobus fulgidus Pelota reveals inter-domain structural… · the same entry in another collection · chain A against A, TM-score 1.00
- O29421 · AlphaFold monomer V2.0 prediction for protein pelota homolog (O29421) · a predicted model of the same protein · chain B against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O29421
- Elsewhere: RCSB PDB 3OBY · PDBe 3OBY · UniProt O29421
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.