Research workbench
Crystal structure of putative dioxygenase from bacillus subtilis subsp. subtilis str. 168
Analyse Crystal structure of putative dioxygenase from bacillus subtilis subsp.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OAJ
- Type
- protein
- Length
- 620 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative ring-cleaving dioxygenase mhqo
- EC
- 1.13.11.-
- UniProt
- P96693
- Ligands
- ZN, SO4
- Pockets
- 3 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative ring-cleaving dioxygenase mhqo (EC 1.13.11.-) | protein | 310 | 19% helix, 35% strand | P96693 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 910 | 0.76 | 0.79 | 90 | SO4 |
| 2 | 84 | 0.49 | 0.82 | 21 | SO4 |
| 3 | 58 | 0.29 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 462 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3OAJ · CRYSTAL STRUCTURE OF putative dioxygenase from Bacillus subtilis subsp. subtilis str. 168 · the same entry in another collection · chain A against A, TM-score 1.00
- P96693 · AlphaFold monomer V2.0 prediction for putative ring-cleaving dioxygenase mhqo (P96693) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P96693
- Elsewhere: RCSB PDB 3OAJ · PDBe 3OAJ · UniProt P96693
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.