Research workbench
Giardia lamblia 15.5KD RNA binding protein
Analyse Giardia lamblia 15.5KD RNA binding protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3O85
- Type
- protein
- Length
- 241 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal protein L7AE
- UniProt
- A8BMJ0
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal protein L7AE | protein | 120 | 45% helix, 14% strand | A8BMJ0 |
| B | Ribosomal protein L7AE | protein | 121 | 45% helix, 14% strand | A8BMJ0 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 108 | 0.37 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 624 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 3O85 · Giardia lamblia 15.5kD RNA binding protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8BMJ0
- Elsewhere: RCSB PDB 3O85 · PDBe 3O85 · UniProt A8BMJ0
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