Research workbench
Complex of an ALPHA/BETA-peptide based on the GP41 chr domain bound to GP41-5
Analyse Complex of an ALPHA/BETA-peptide based on the GP41 chr domain bound to GP41-5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3O42
- Type
- protein
- Length
- 232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GP41-5; ALPHA/BETA-peptide based on HIV GP41 chr domain sequence
Structure
x-ray diffraction · 2 distinct chains · 86% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GP41-5 | protein | 197 | 86% helix, 0% strand | — |
| B | ALPHA/BETA-peptide based on HIV GP41 chr domain sequence | protein | 35 | 86% helix, 0% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1183 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (nonstandard).
Compared structures
- 3O42 · Complex of an alpha/beta-peptide based on the gp41 CHR domain bound to gp41-5 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3O42 · PDBe 3O42
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