Research workbench
Crystal structure of a superantigen-like protein (SAV0433) from staphylococcus aureus MU50 at 2.05 a resolution
Analyse Crystal structure of a superantigen-like protein (SAV0433) from staphylococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3O13
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Superantigen-like protein
- UniProt
- Q99WG9
- Ligands
- CL
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Superantigen-like protein | protein | 187 | 17% helix, 44% strand | Q99WG9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.34 | 0.74 | 18 | empty |
| 2 | 50 | 0.26 | 0.74 | 12 | empty |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 3O13 · Crystal structure of a superantigen-like protein (SAV0433) from Staphylococcus aureus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99WG9
- Elsewhere: RCSB PDB 3O13 · PDBe 3O13 · UniProt Q99WG9
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