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Crystal structure of human estrogen sulfotransferase in complex with in-active cofactor pap and 3,5,3',5'- tetrachloro-biphenyl-4,4'-diol

Analyse Crystal structure of human estrogen sulfotransferase in complex with in-active… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1G3M
Type
protein
Length
575 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Estrogen sulfotransferase
EC
2.8.2.4
UniProt
P49888
Ligands
A3P, PCQ
Pockets
3 · best druggability 0.80

Structure

x-ray diffraction · 2 distinct chains · 47% helix, 12% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AEstrogen sulfotransferase (EC 2.8.2.4)protein29047% helix, 12% strandP49888
BEstrogen sulfotransferase (EC 2.8.2.4)protein28548% helix, 11% strandP49888

Ligands and binding sites

  • A3P · Adenosine-3'-5'-diphosphate · ligand · 2 copies · chains A, B
  • PCQ · 3,5,3',5'-tetrachloro-biphenyl-4,4'-diol · ligand · 2 copies · chains A, B
  • EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15070.800.8757A3P, PCQ
24490.760.8457A3P, PCQ
3680.310.7414empty

Interfaces

1 interface between chains.

  • A–B · 384 Ų buried · 8 hydrogen bonds · protein-protein

Compared structures

  • 1G3M · Crystal structure of human estrogen sulfotransferase in complex with in-active cofactor… · the same entry in another collection · chain A against A, TM-score 1.00
  • P49888 · AlphaFold monomer V2.0 prediction for sulfotransferase 1E1 (P49888) · a predicted model of the same protein · chain B against A, TM-score 1.00

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