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Crystal structure of the transcriptional regulator yvhj from bacillus subtilis. northeast structural genomics consortium target SR735.

Analyse Crystal structure of the transcriptional regulator yvhj from bacillus subtilis.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3NXH
Type: protein
Length: 218 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcriptional regulator yvhj
UniProt: P96499
Pockets: 1 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transcriptional regulator yvhj	protein	218	35% helix, 22% strand	P96499

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	807	0.86	0.88	65	empty

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3NXH · Crystal Structure of the transcriptional regulator yvhJ from Bacillus subtilis. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
P96499 · AlphaFold monomer V2.0 prediction for polyisoprenyl-teichoic acid-- peptidoglycan… · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P96499
Elsewhere: RCSB PDB 3NXH · PDBe 3NXH · UniProt P96499

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