Research workbench

Profilin I from arabidopsis thaliana

Analyse Profilin I from arabidopsis thaliana in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3NUL
Type: protein
Length: 130 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Profilin I
UniProt: Q42449
Ligands: SO4
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Profilin I	protein	130	29% helix, 34% strand	Q42449

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.36	0.80	17	GOL

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

3NUL · Profilin I from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
Q42449 · AlphaFold monomer V2.0 prediction for profilin-1 (Q42449) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q42449
Elsewhere: RCSB PDB 3NUL · PDBe 3NUL · UniProt Q42449

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