Research workbench
Structure of the mlle domain of edd in complex with a PAM2 peptide from PAIP1
Analyse Structure of the mlle domain of edd in complex with a PAM2 peptide from PAIP1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3NTW
- Type
- protein
- Length
- 143 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E3 ubiquitin-protein ligase UBR5; Polyadenylate-binding protein-interacting protein 1
- EC
- 6.3.2.-
- UniProt
- Q62671, Q9H074
Structure
x-ray diffraction · 4 distinct chains · 68% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase UBR5 (EC 6.3.2.-) | protein | 61 | 82% helix, 0% strand | Q62671 |
| B | Polyadenylate-binding protein-interacting protein 1 | protein | 12 | 0% helix, 0% strand | Q9H074 |
| C | E3 ubiquitin-protein ligase UBR5 (EC 6.3.2.-) | protein | 56 | 84% helix, 0% strand | Q62671 |
| D | Polyadenylate-binding protein-interacting protein 1 | protein | 14 | 0% helix, 0% strand | Q9H074 |
Interfaces
6 interfaces between chains.
- C–D · 683 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 676 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 273 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 202 Ų buried · 5 hydrogen bonds · protein-protein
- A–D · 194 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3NTW · Structure of the MLLE domain of EDD in complex with a PAM2 peptide from Paip1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H074 · AlphaFold monomer V2.0 prediction for polyadenylate-binding protein- interacting protein… · a predicted model of the same protein · chain B against A, TM-score 0.50
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q62671
- Every structure of UniProt Q9H074
- Elsewhere: RCSB PDB 3NTW · PDBe 3NTW · UniProt Q62671 · UniProt Q9H074
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