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Crystal structure of the RNA recognition motif of yeast EIF3B residues 76-161

Analyse Crystal structure of the RNA recognition motif of yeast EIF3B residues 76-161 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3NS5
Type: protein
Length: 180 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Eukaryotic translation initiation factor 3 subunit B
UniProt: P06103
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Eukaryotic translation initiation factor 3 subunit B	protein	90	30% helix, 26% strand	P06103

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	223	0.48	0.74	37	empty

Interfaces

1 interface between chains.

A–B · 457 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

3NS5 · Crystal structure of the RNA recognition motif of yeast eIF3b residues 76-161 · the same entry in another collection · chain A against A, TM-score 1.00
P06103 · AlphaFold monomer V2.0 prediction for eukaryotic translation initiation factor 3 subunit… · a predicted model of the same protein · chain B against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06103
Elsewhere: RCSB PDB 3NS5 · PDBe 3NS5 · UniProt P06103

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