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Crystal structure of a putative secreted protein (PA3611) from pseudomonas aeruginosa at 1.60 a resolution

Analyse Crystal structure of a putative secreted protein (PA3611) from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3NPD
Type: protein
Length: 113 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative secreted protein
UniProt: Q9HY15
Ligands: SO4
Pockets: 1 · best druggability 0.29

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative secreted protein	protein	113	45% helix, 30% strand	Q9HY15

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A
CXS · 3-cyclohexyl-1-propylsulfonic acid · additive · 4 copies · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.29	0.73	15	CXS

Modifications

Observed in the structure: 2 modified, 1 disulfide (engineered, disulfide).

Compared structures

3NPD · Crystal structure of a putative secreted protein (PA3611) from PSEUDOMONAS AERUGINOSA at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9HY15
Elsewhere: RCSB PDB 3NPD · PDBe 3NPD · UniProt Q9HY15

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