Research workbench
Crystal structure of a glycerophosphodiester phosphodiesterase (BDI_0402) from parabacteroides distasonis atcc 8503 at 1.89 a resolution
Analyse Crystal structure of a glycerophosphodiester phosphodiesterase (BDI_0402) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3NO3
- Type
- protein
- Length
- 238 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycerophosphodiester phosphodiesterase
- UniProt
- A6L916
- Ligands
- MG
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycerophosphodiester phosphodiesterase | protein | 238 | 40% helix, 21% strand | A6L916 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3NO3 · Crystal structure of a glycerophosphodiester phosphodiesterase (BDI_0402) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6L916
- Elsewhere: RCSB PDB 3NO3 · PDBe 3NO3 · UniProt A6L916
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