Research workbench
Structure of the minor pseudopilin xcpw from the pseudomonas aeruginosa type II secretion system
Analyse Structure of the minor pseudopilin xcpw from the pseudomonas aeruginosa type II… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3NJE
- Type
- protein
- Length
- 320 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- General secretion pathway protein J
- UniProt
- Q00517
- Pockets
- 6 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | General secretion pathway protein J | protein | 156 | 21% helix, 43% strand | Q00517 |
| B | General secretion pathway protein J | protein | 164 | 17% helix, 41% strand | Q00517 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.54 | 0.86 | 25 | empty |
| 2 | 247 | 0.52 | 0.76 | 39 | empty |
| 3 | 101 | 0.44 | 0.78 | 22 | empty |
| 4 | 95 | 0.42 | 0.78 | 19 | empty |
| 5 | 111 | 0.39 | 0.75 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 812 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 3NJE · Structure of the Minor Pseudopilin XcpW from the Pseudomonas aeruginosa Type II Secretion… · the same entry in another collection · chain A against A, TM-score 1.00
- Q00517 · AlphaFold monomer V2.0 prediction for type II secretion system protein J (Q00517) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q00517
- Elsewhere: RCSB PDB 3NJE · PDBe 3NJE · UniProt Q00517
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