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Crystal structure of CCE_0566 from the cyanobacterium cyanothece 51142, a protein associated with nitrogen fixation from the DUF269 family

Analyse Crystal structure of CCE_0566 from the cyanobacterium cyanothece 51142, a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3NJ2
Type: protein
Length: 303 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DUF269-containing protein
UniProt: B1WPD5
Pockets: 4 · best druggability 0.53

Structure

x-ray diffraction · 2 distinct chains · 55% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DUF269-containing protein	protein	151	55% helix, 15% strand	B1WPD5
B	DUF269-containing protein	protein	152	56% helix, 15% strand	B1WPD5

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	302	0.53	0.74	41	empty
2	147	0.46	0.76	19	empty
3	54	0.40	0.81	14	empty
4	101	0.37	0.74	16	empty

Interfaces

1 interface between chains.

A–B · 793 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

3NJ2 · Crystal structure of cce_0566 from the cyanobacterium Cyanothece 51142, a protein… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B1WPD5
Elsewhere: RCSB PDB 3NJ2 · PDBe 3NJ2 · UniProt B1WPD5

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