Research workbench
Cryptosporidium parvum cyclin-dependent kinase CGD5_2510 with ADP bound.
Analyse Cryptosporidium parvum cyclin-dependent kinase CGD5_2510 with ADP bound. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3NIZ
- Type
- protein
- Length
- 288 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rhodanese family protein
- UniProt
- Q5CRJ8
- Ligands
- ADP, MG
- Pockets
- 3 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhodanese family protein | protein | 288 | 35% helix, 17% strand | Q5CRJ8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 628 | 0.76 | 0.82 | 71 | MG, ADP |
| 2 | 92 | 0.35 | 0.74 | 15 | empty |
| 3 | 65 | 0.34 | 0.76 | 13 | empty |
Compared structures
- 3NIZ · Cryptosporidium parvum cyclin-dependent kinase cgd5_2510 with ADP bound. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5CRJ8
- Elsewhere: RCSB PDB 3NIZ · PDBe 3NIZ · UniProt Q5CRJ8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.