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Structure of yeast importin-beta (KAP95P)

Analyse Structure of yeast importin-beta (KAP95P) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3ND2
Type: protein
Length: 861 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Importin subunit beta-1
UniProt: Q06142
Pockets: 6 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Importin subunit beta-1	protein	861	79% helix, 0% strand	Q06142

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	224	0.62	0.81	24	empty
2	282	0.53	0.75	33	empty
3	126	0.44	0.77	23	empty
4	88	0.37	0.76	13	empty
5	56	0.34	0.78	19	empty

Compared structures

3ND2 · Structure of Yeast Importin-beta (Kap95p) · the same entry in another collection · chain A against A, TM-score 1.00
Q06142 · AlphaFold monomer V2.0 prediction for importin subunit beta-1 (Q06142) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q06142
Elsewhere: RCSB PDB 3ND2 · PDBe 3ND2 · UniProt Q06142

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