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Crystal structure of a putative glutathionylspermidine synthase (MFLA_0391) from methylobacillus flagellatus kt at 2.35 a resolution
Analyse Crystal structure of a putative glutathionylspermidine synthase (MFLA_0391)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3N6X
- Type
- protein
- Length
- 451 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative glutathionylspermidine synthase
- UniProt
- Q1H4C5
- Ligands
- SO4, CL
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative glutathionylspermidine synthase | protein | 451 | 37% helix, 22% strand | Q1H4C5 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A
- CL · Chloride ion · ion · 3 copies · chains A
- GOL · Glycerol · additive · 18 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 515 | 0.71 | 0.80 | 54 | SO4, GOL |
| 2 | 122 | 0.38 | 0.73 | 15 | empty |
| 3 | 68 | 0.37 | 0.78 | 16 | empty |
| 4 | 53 | 0.29 | 0.75 | 14 | GOL |
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3N6X · Crystal structure of a Putative glutathionylspermidine synthase (Mfla_0391) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1H4C5
- Elsewhere: RCSB PDB 3N6X · PDBe 3N6X · UniProt Q1H4C5
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